mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.37.1 revision d7ab7d0ba1c1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,788,228 | 1 | . | C | 75.0% | 111.2 / 42.0 | 44 | intergenic (+767/‑103) | BCHEFKBB_01823/BCHEFKBB_01824 | hypothetical protein [NGO_1810]/pseudouridine synthase [NGO_1811] |
| * | Exported | 2,073,047 | 1 | . | G | 73.3% | 74.6 / 28.5 | 30 | intergenic (‑108/‑396) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| * | Exported | 2,073,047 | 2 | . | G | 73.3% | 76.1 / 28.5 | 30 | intergenic (‑108/‑396) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| * | Exported | 1,729,718 | 1 | . | G | 72.0% | 89.3 / 52.7 | 50 | coding (745/753 nt) | BCHEFKBB_01772 | glycosyl transferase family 1 [NGO_1765] |
| * | Exported | 2,073,047 | 3 | . | G | 56.7% | 46.3 / 52.5 | 30 | intergenic (‑108/‑396) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| * | Exported | 2,135,730 | 4 | . | G | 45.8% | 23.5 / 102.9 | 48 | intergenic (+323/‑69) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| * | Exported | 1,831,990 | 0 | G | A | 38.0% | 191.4 / 291.6 | 239 | intergenic (‑123/+230) | BCHEFKBB_01881/BCHEFKBB_01882 | Opacity protein opA54 [NGO_09965]/transposase [NGO_09970] |
| * | Exported | 564,718 | 0 | T | G | 30.1% | 242.1 / 32.4 | 136 | N308H (AAC→CAC) | uvrC | excinuclease ABC subunit C [NGO_0578] |
| * | Exported | 1,887,934 | 0 | T | C | 29.7% | 516.9 / 263.6 | 288 | intergenic (‑317/+264) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 1,887,943 | 0 | A | G | 27.9% | 558.5 / 244.5 | 304 | intergenic (‑326/+255) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 1,887,941 | 0 | C | A | 27.0% | 563.5 / 218.5 | 305 | intergenic (‑324/+257) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 1,077,993 | 0 | G | T | 26.2% | 309.4 / 25.5 | 189 | E59* (GAA→TAA) | BCHEFKBB_01113 | hypothetical protein [NGO_1132] |
| * | Exported | 801,460 | 0 | C | A | 25.8% | 308.5 / 33.5 | 163 | R178R (CGC→CGA) | cysI | Sulfite reductase [NADPH] hemoproteinbeta‑component |
| * | Exported | 1,572,212 | 0 | C | A | 24.2% | 271.5 / 18.3 | 128 | M223I (ATG→ATT) | BCHEFKBB_01601 | hypothetical protein [NGO_1599] |
| * | Exported | 1,383,870 | 0 | G | T | 23.7% | 370.0 / 31.4 | 169 | R262L (CGT→CTT) | BCHEFKBB_01424 | thiamine biosynthesis protein ApbE [NGO_1420] |
| * | Exported | 1,891,025 | 0 | A | T | 23.1% | 296.6 / 14.4 | 135 | L75Q (CTG→CAG) | BCHEFKBB_01932 | pilus assembly protein [NGO_10270] |
| * | Exported | 1,077,987 | 0 | C | A | 23.1% | 358.8 / 21.9 | 186 | Q57K (CAA→AAA) | BCHEFKBB_01113 | hypothetical protein [NGO_1132] |
| * | Exported | 966,597 | 0 | A | T | 22.6% | 350.5 / 10.9 | 164 | M284L (ATG→TTG) | secA | preprotein translocase subunit SecA [NGO_0996] |
| * | Exported | 809,777 | 0 | A | C | 22.5% | 328.6 / 13.2 | 169 | V142V (GTT→GTG) | BCHEFKBB_00821 | RNA methyltransferase [NGO_0819] |
| * | Exported | 282,098 | 0 | C | A | 22.1% | 437.5 / 21.4 | 205 | E109* (GAA→TAA) | panS | Pantothenate precursors transporter PanS |
| Marginal new junction evidence (lowest skew 10 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 75346 | 145 (0.810) | 30 (0.470) +25 bp |
5/104 | 4.3 | 53.7% | intergenic (‑87/‑1007) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | = 1482412 | 0 (0.000) | intergenic (+357/‑118) | BCHEFKBB_01513/BCHEFKBB_01514 | hypothetical protein [NGO_07995]/Opacity protein opA54 [NGO_1513] | |||||
| * | ? | Exported | 75303 = | NA (NA) | 0 (0.000) +25 bp |
5/104 | 4.3 | NA | intergenic (‑44/‑1050) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | = 2038034 | NA (NA) | intergenic (‑43/+432) | BCHEFKBB_02086/pilE | Opacity protein opA54 [NGO_11100]/Fimbrial protein | |||||
| * | ? | Exported | = 2135720 | 26 (0.160) | 46 (0.260) +GGGG |
21/264 | 4.7 | 63.7% | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| ? | Exported | 2135721 = | 26 (0.140) | intergenic (+314/‑78) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | 2132863 = | 122 (0.680) | 32 (0.220) +TCCCCCCCCCCCCCC |
18/242 | 4.9 | 32.0% | intergenic (+329/‑67) | BCHEFKBB_02180/BCHEFKBB_02181 | glycyl‑tRNA synthetase subunit beta [NGO_2154]/glycosyl transferase [NGO_11610] |
| ? | Exported | = 2135720 | 39 (0.230) | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | = 2073038 | 8 (0.050) | 47 (0.270) +GGG |
20/268 | 5.1 | 85.3% | intergenic (‑99/‑405) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| ? | Exported | 2073039 = | 8 (0.040) | intergenic (‑100/‑404) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] | |||||
| * | ? | Exported | = 75346 | NA (NA) | 50 (0.780) +25 bp |
3/104 | 5.6 | NA | intergenic (‑87/‑1007) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | = 924691 | NA (NA) | intergenic (‑442/‑118) | BCHEFKBB_00942/BCHEFKBB_00943 | proline iminopeptidase [NGO_0949]/Opacity protein opA54 [NGO_08230] | |||||
| * | ? | Exported | = 51928 | 86 (0.480) | 39 (0.240) | 18/268 | 5.7 | 23.1% | intergenic (‑429/+96) | BCHEFKBB_00048/BCHEFKBB_00049 | carbamoyl‑phosphate synthase [NGO_0053]/pilus assembly protein [NGO_0055] |
| ? | Exported | 1887832 = | 181 (1.100) | intergenic (‑215/+366) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] | |||||
| * | ? | Exported | = 2135720 | 33 (0.200) | 33 (0.190) +GGG |
15/266 | 6.7 | 49.6% | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| ? | Exported | 2135721 = | 33 (0.180) | intergenic (+314/‑78) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | = 69531 | 1 (0.010) | 54 (0.310) +GAAGA |
3/124 | 6.8 | 58.9% | intergenic (‑43/‑515) | BCHEFKBB_00062/BCHEFKBB_00063 | Opacity protein opA54 [NGO_00350]/riboflavin kinase [NGO_0068] |
| ? | Exported | = 924765 | 76 (0.420) | intergenic (‑516/‑44) | BCHEFKBB_00942/BCHEFKBB_00943 | proline iminopeptidase [NGO_0949]/Opacity protein opA54 [NGO_08230] | |||||
| * | ? | Exported | 69537 = | 118 (0.660) | 5 (0.060) | 3/134 | 7.3 | 8.7% | intergenic (‑49/‑509) | BCHEFKBB_00062/BCHEFKBB_00063 | Opacity protein opA54 [NGO_00350]/riboflavin kinase [NGO_0068] |
| ? | Exported | = 69531 | 51 (0.620) | intergenic (‑43/‑515) | BCHEFKBB_00062/BCHEFKBB_00063 | Opacity protein opA54 [NGO_00350]/riboflavin kinase [NGO_0068] | |||||