| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,831,990 | 0 | G | A | 30.0% | 393.5 / 228.8 | 251 | intergenic (‑123/+230) | BCHEFKBB_01881/BCHEFKBB_01882 | Opacity protein opA54 [NGO_09965]/transposase [NGO_09970] |
| Reads supporting (aligned to +/- strand): ref base G (104/69); new base A (45/29); total (153/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.09e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 286 total aligned reads displayed.
GCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAT > Exported/1831845‑1832140 | gcgtaagccagatccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGACGAGAAGTTTTTTGTCgg > 2:224299‑M2/131‑151 (MQ=255)gcgtaagccagatccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCgg > 2:1199055‑M2/131‑151 (MQ=255)gcgtaagccagatccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCgg > 1:480451‑M2/131‑151 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCGCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 2:432413/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 2:838991/151‑1 (MQ=255) agccagatccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGACGAGAAGTGTTTTGTCGTCCGTa > 2:1535642‑M2/126‑151 (MQ=255) agccagatccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTGTTTTGTCGGCCGTa > 2:314966‑M2/126‑151 (MQ=255) aGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCat > 1:1169344/1‑151 (MQ=255) aGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCa > 2:336046/1‑151 (MQ=255) atccgcctgcacatacgggccgcgcgcatggtcttcacccgccgcccgcgctggggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGc < 2:812018‑M2/29‑1 (MQ=255) atccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGc < 1:900163‑M2/29‑1 (MQ=255) atccgcctgaacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGc < 2:770900‑M2/29‑1 (MQ=255) aTCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATc < 2:1412348/148‑1 (MQ=255) aTCCGCCTGCACATACGGGCCGCGCCCATGGTCGTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGACCAGACGAGAAGTTTTTTGTCGACCGTATGCATATc < 2:1295108/148‑1 (MQ=11) cggcctgaccatacgggccgcgcccctggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGACAAGTTTTTTGTCGGCCGTATGCATATc < 2:650841‑M2/34‑1 (MQ=255) ccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATc < 1:1500956‑M2/34‑1 (MQ=255) ccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATc < 1:717185‑M2/34‑1 (MQ=255) ccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATc < 1:1067387‑M2/34‑1 (MQ=255) ccgcctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaacagaagagaagagaagagaagagaacAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATc < 1:1423957‑M2/34‑1 (MQ=255) ccGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTc < 2:132274/151‑1 (MQ=255) ccGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGACAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTc < 1:1681621/151‑1 (MQ=255) cGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTc > 2:777426/1‑150 (MQ=255) cctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagacgAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAAc < 1:315441‑M2/37‑1 (MQ=255) cctgcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAAc < 2:89462‑M2/37‑1 (MQ=255) gcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTTTCGGCCGTATGCATATCAACTc > 1:1355404‑M2/112‑150 (MQ=255) gcacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTc > 2:622658‑M2/112‑150 (MQ=255) cacatacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTTTGCATATCAACTCCg > 2:582674‑M2/111‑151 (MQ=255) catacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGaa > 1:546318‑M2/109‑151 (MQ=255) catacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGaa > 2:1439005‑M2/109‑151 (MQ=255) catacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGaa > 2:510444‑M2/109‑151 (MQ=255) catacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGaa > 2:89955‑M2/109‑151 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATc < 2:932734/137‑1 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAatattt > 1:953508/1‑149 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCAGCCGCACGATCTGCGGAAGAGAAGAGAAGATAAGAGAAGAGAAGAGAAGAGAAGATAAGAGAATAGAAGAGAACAGAAGAGAATAGAAGTATTTTGTAGGCCGTATGAATATCAACTCCGaa > 1:785711/1‑151 (MQ=2) atacgggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAat < 1:274171‑M2/44‑1 (MQ=255) ggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGTAGTGTTTTTTGGGGCGTATGCATATAAACTGCGAATATCTa > 1:85552‑M2/103‑151 (MQ=255) ggccgcgcccatggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGc > 2:474113‑M2/103‑131 (MQ=255) ggCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTTTCGACCGAATGCATATCAACTCCGAATATTTAAGAtt > 1:559305/1‑151 (MQ=14) ctcccatggtcttcacccgccgcccgcgctgctgaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGAt < 1:1646910‑M2/53‑1 (MQ=255) cccATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAattat > 2:1409282/1‑151 (MQ=255) atggtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAatt < 1:422056‑M2/59‑1 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAattatt > 2:189103‑M2/90‑151 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAattatt > 2:1218765‑M2/90‑151 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAattatt > 1:1029940‑M2/90‑151 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAattatt > 1:235963‑M2/90‑151 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAattatt > 1:727014‑M2/90‑151 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATATAAGATTAAattatt > 1:38270‑M2/90‑151 (MQ=255) gtcttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTATTGTCGGGCGTATTCATATCAAATACGAAAATCTAAGATTaaattaat > 2:174571‑M2/90‑149 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATTCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 2:505317/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAAc > 1:1430477/1‑121 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAAc < 2:1430005/121‑1 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 1:1579679/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 2:562287/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 1:1540660/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 2:29476/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 1:130586/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCAGATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 1:455933/1‑150 (MQ=255) tCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaaga < 1:277843/151‑3 (MQ=255) cttcacccgccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTaa > 2:594547‑M2/88‑151 (MQ=255) ccgcccgcgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGTCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGAATGt > 2:132703‑M2/79‑151 (MQ=255) cgctgcggaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATaaa < 2:989904‑M2/80‑1 (MQ=255) gCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTa > 1:1609027/1‑151 (MQ=255) aagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGt < 2:1211432‑M2/88‑1 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGGTTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTAttt > 2:287806‑M2/60‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAAATCCGAATATCTAAGATTAAATTATTAAAAATATTGTTAATAAACGCCAAGTAttt > 2:1632827‑M2/60‑151 (MQ=255) gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTACGAATATCTAAGATTAAATTATTAAAAATATTGTTAATAAACGCCAAGTATTTTATCAGAt > 1:1280946‑M2/52‑151 (MQ=255) gagaagagaagagaagagaagagaagagaagagaggagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGtt > 1:712505‑M2/47‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGtttt > 1:1369676‑M2/45‑151 (MQ=255) aagagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGttt < 1:836883‑M2/106‑1 (MQ=255) aagagaagagaagacaagagacgagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGttt < 2:692194‑M2/106‑1 (MQ=255) gagaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGc > 1:1384496‑M2/42‑150 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTTTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGACgg > 2:78170‑M2/40‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGt < 1:591066‑M2/73‑1 (MQ=255) gagaagagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAt > 1:1182582‑M2/32‑151 (MQ=255) aagagaacagaagagaagagaagagaagAGAAGAGAACTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAt < 1:793537‑M2/120‑1 (MQ=255) cgagaagagcagagaagagaagagaagAGCCGAGAAGTTTGTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAACAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAtttgt < 1:711231‑M2/124‑1 (MQ=255) gagaagagaagagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAtttgtt > 1:761752‑M2/27‑151 (MQ=255) agagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAg > 2:861858‑M2/18‑151 (MQ=255) gagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGa > 1:1081944‑M2/17‑151 (MQ=255) gagaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGa > 1:96948‑M2/17‑151 (MQ=255) gaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAAt > 2:940993‑M2/15‑151 (MQ=255) gaagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAAt > 1:1008271‑M2/15‑151 (MQ=255) aagagaagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGAATGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGaa < 2:135788‑M2/136‑1 (MQ=255) aagagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGtatt < 1:220705‑M2/142‑1 (MQ=255) gagaagAGAAGAGAAGTTTTTTGTCGGCCGTATTCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTTCCGGGATATGATTTGTTTTGTTAAATAATGtatttat > 1:341991‑M2/7‑151 (MQ=255) gagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAATATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATAAGATTTGTTTTGCCGGGATAAGATTTTTTTTGTTAAAGAATGtatttat > 2:728506‑M2/7‑151 (MQ=255) gagaagAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCATATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGtatttat > 2:313634‑M2/7‑151 (MQ=255) gagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAAt > 2:483370/1‑151 (MQ=255) aagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATcc < 1:474008/150‑1 (MQ=255) tttttGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGcc < 2:341955/151‑1 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAATAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:1479064/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAATTCCCGGCCAGCCGGGAt > 2:1162921/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:704699/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:245671/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 1:639183/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:1070403/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 1:574997/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:98831/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCACGGCCAGCCGGGAt > 2:363256/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATATGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:1061115/1‑151 (MQ=255) | GCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAG‑‑‑‑‑AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAT > Exported/1831845‑1832140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |