mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.37.1 revision d7ab7d0ba1c1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 42,301 | 5 bp→5 bp | coding (156‑160/462 nt) | BCHEFKBB_00042 ← | acetyl‑CoA carboxylase [NGO_0045] |
| JC | 358,371 | (CGCAA)16→14 | coding (128‑137/243 nt) | BCHEFKBB_00366 → | hypothetical protein [NGO_0366] |
| RA | 522,455 | A→G | Q845R (CAG→CGG) T130T (ACT→ACC) |
BCHEFKBB_00548 → BCHEFKBB_00549 ← |
restriction endonuclease EcoPI subunit R[NGO_0546] hypothetical protein |
| RA | 522,457 | 4 bp→CC | coding (2536‑2539/2592 nt) coding (385‑388/462 nt) |
BCHEFKBB_00548 → BCHEFKBB_00549 ← |
restriction endonuclease EcoPI subunit R[NGO_0546] hypothetical protein |
| RA | 522,467 | 2 bp→CGG | coding (2546‑2547/2592 nt) coding (377‑378/462 nt) |
BCHEFKBB_00548 → BCHEFKBB_00549 ← |
restriction endonuclease EcoPI subunit R[NGO_0546] hypothetical protein |
| RA | 1,162,857 | C→T | G411D (GGC→GAC) | BCHEFKBB_01205 ← | long‑chain fatty acid‑‑CoA ligase [NGO_1213] |
| RA | 1,788,228 | (C)10→11 | intergenic (+767/‑103) | BCHEFKBB_01823 → / → BCHEFKBB_01824 | hypothetical protein [NGO_1810]/pseudouridine synthase [NGO_1811] |
| RA | 2,073,047 | (G)9→10 | intergenic (‑108/‑396) | BCHEFKBB_02124 ← / → BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| RA | 2,134,653 | (G)9→14 | coding (166/183 nt) | BCHEFKBB_02183 → | hypothetical protein |
| JC | 2,135,730 | (G)10→14 | intergenic (+323/‑69) | BCHEFKBB_02184 → / → BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | Exported | 745761–745878 | 747125–745880 | 3–1365 | 116 [114] | [113] 115 | BCHEFKBB_00758–[BCHEFKBB_00760] | BCHEFKBB_00758,BCHEFKBB_00759,[BCHEFKBB_00760] |
| * | * | ÷ | Exported | 1072585–1075092 | 1077570–1075129 | 38–4986 | 117 [112] | [106] 128 | [BCHEFKBB_01101]–BCHEFKBB_01111 | [BCHEFKBB_01101],BCHEFKBB_01102,BCHEFKBB_01103,BCHEFKBB_01104,BCHEFKBB_01105,BCHEFKBB_01106,BCHEFKBB_01107,BCHEFKBB_01108,BCHEFKBB_01109,BCHEFKBB_01110,BCHEFKBB_01111 |
| * | * | ÷ | Exported | 1215573–1220269 | 1223517–1223452 | 3184–7945 | 116 [113] | [111] 118 | BCHEFKBB_01257–BCHEFKBB_01268 | BCHEFKBB_01257,BCHEFKBB_01258,BCHEFKBB_01259,BCHEFKBB_01260,BCHEFKBB_01261,BCHEFKBB_01262,BCHEFKBB_01263,BCHEFKBB_01264,BCHEFKBB_01265,BCHEFKBB_01266,BCHEFKBB_01267,BCHEFKBB_01268 |
| * | * | ÷ | Exported | 2065338–2065503 | 2065937–2065620 | 118–600 | 115 [114] | [114] 117 | [BCHEFKBB_02118] | [BCHEFKBB_02118] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 69531 | 2 (0.020) | 79 (0.690) +65 bp |
4/6 | 0.0 | 59.9% | intergenic (‑43/‑515) | BCHEFKBB_00062/BCHEFKBB_00063 | Opacity protein opA54 [NGO_00350]/riboflavin kinase [NGO_0068] |
| ? | Exported | = 1034998 | 186 (0.900) | intergenic (+414/‑44) | BCHEFKBB_01058/BCHEFKBB_01059 | hypothetical protein/Opacity protein opA54 [NGO_05620] | |||||
| * | ? | Exported | = 75346 | NA (NA) | 203 (1.350) | 33/216 | 1.4 | NA | intergenic (‑87/‑1007) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | = 1482447 | NA (NA) | intergenic (+392/‑83) | BCHEFKBB_01513/BCHEFKBB_01514 | hypothetical protein [NGO_07995]/Opacity protein opA54 [NGO_1513] | |||||
| * | ? | Exported | = 1428158 | 85 (0.410) | 115 (0.940) | 36/176 | 0.4 | 61.9% | intergenic (‑107/‑343) | BCHEFKBB_01461/BCHEFKBB_01462 | Opacity protein opA54 [NGO_07725]/hypothetical protein |
| ? | Exported | 1831970 = | 91 (0.740) | intergenic (‑103/+250) | BCHEFKBB_01881/BCHEFKBB_01882 | Opacity protein opA54 [NGO_09965]/transposase [NGO_09970] | |||||