mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.37.1 revision d7ab7d0ba1c1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 47 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,135,730 | 3 | . | G | 79.1% | 81.3 / 32.1 | 43 | intergenic (+323/‑69) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| * | Exported | 1,729,718 | 1 | . | G | 75.8% | 164.2 / 55.6 | 64 | coding (745/753 nt) | BCHEFKBB_01772 | glycosyl transferase family 1 [NGO_1765] |
| * | Exported | 2,073,047 | 4 | . | G | 66.7% | 45.2 / 31.1 | 27 | intergenic (‑108/‑396) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| * | Exported | 2,135,730 | 4 | . | G | 55.8% | 52.9 / 77.7 | 43 | intergenic (+323/‑69) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| * | Exported | 55,591 | 0 | T | A | 43.6% | 24.6 / 11.7 | 39 | N36K (AAT→AAA) | BCHEFKBB_00050 | hypothetical protein |
| * | Exported | 1,831,990 | 0 | G | A | 35.5% | 214.9 / 225.6 | 206 | intergenic (‑123/+230) | BCHEFKBB_01881/BCHEFKBB_01882 | Opacity protein opA54 [NGO_09965]/transposase [NGO_09970] |
| * | Exported | 2,015,014 | 0 | G | C | 35.4% | 494.1 / inf | 261 | Q158E (CAA→GAA) | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| * | Exported | 1,887,934 | 0 | T | C | 33.0% | 359.5 / 233.9 | 228 | intergenic (‑317/+264) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 2,015,008 | 0 | C | T | 32.9% | 496.5 / 269.7 | 257 | A160T (GCT→ACT) ‡ | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| * | Exported | 1,891,025 | 0 | A | T | 32.8% | 192.1 / 23.9 | 116 | L75Q (CTG→CAG) | BCHEFKBB_01932 | pilus assembly protein [NGO_10270] |
| * | Exported | 2,015,001 | 0 | G | T | 31.5% | 536.6 / 271.5 | 271 | T162N (ACC→AAC) ‡ | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| * | Exported | 2,015,002 | 0 | T | C | 30.9% | 563.7 / 271.7 | 276 | T162A (ACC→GCC) ‡ | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| * | Exported | 2,015,006 | 0 | A | T | 30.9% | 547.0 / 250.6 | 275 | A160A (GCT→GCA) ‡ | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| * | Exported | 1,887,943 | 0 | A | G | 30.7% | 399.5 / 221.5 | 246 | intergenic (‑326/+255) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 2,015,007 | 0 | G | T | 30.6% | 553.3 / 269.1 | 275 | A160D (GCT→GAT) ‡ | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| * | Exported | 101,587 | 0 | A | T | 30.5% | 320.4 / 38.1 | 170 | L111Q (CTG→CAG) | BCHEFKBB_00090 | shikimate kinase [NGO_0093] |
| * | Exported | 1,887,941 | 0 | C | A | 28.3% | 451.8 / 192.8 | 248 | intergenic (‑324/+257) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 999,079 | 0 | G | T | 26.8% | 307.4 / 20.1 | 159 | Y7* (TAC→TAA) | BCHEFKBB_01021 | hypothetical protein |
| * | Exported | 1,690,855 | 0 | T | G | 25.5% | 281.5 / 14.8 | 148 | A57A (GCT→GCG) | BCHEFKBB_01736 | peptidase [NGO_1729] |
| * | Exported | 801,460 | 0 | C | A | 25.1% | 365.8 / 28.2 | 179 | R178R (CGC→CGA) | cysI | Sulfite reductase [NADPH] hemoproteinbeta‑component |
| Marginal new junction evidence (lowest skew 10 of 86 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2132863 = | 118 (0.710) | 32 (0.230) +TCCCCCCCCCCCCCC |
20/242 | 3.5 | 32.9% | intergenic (+329/‑67) | BCHEFKBB_02180/BCHEFKBB_02181 | glycyl‑tRNA synthetase subunit beta [NGO_2154]/glycosyl transferase [NGO_11610] |
| ? | Exported | = 2135720 | 37 (0.240) | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | = 51928 | 106 (0.640) | 38 (0.250) | 23/268 | 3.5 | 23.6% | intergenic (‑429/+96) | BCHEFKBB_00048/BCHEFKBB_00049 | carbamoyl‑phosphate synthase [NGO_0053]/pilus assembly protein [NGO_0055] |
| ? | Exported | 1887832 = | 148 (0.970) | intergenic (‑215/+366) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] | |||||
| * | ? | Exported | = 2135720 | 16 (0.100) | 53 (0.330) +GGGG |
22/264 | 3.6 | 76.7% | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| ? | Exported | 2135721 = | 16 (0.100) | intergenic (+314/‑78) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | = 2073038 | 5 (0.030) | 40 (0.250) +GGGG |
17/266 | 4.9 | 88.8% | intergenic (‑99/‑405) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| ? | Exported | 2073039 = | 5 (0.030) | intergenic (‑100/‑404) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] | |||||
| * | ? | Exported | = 75346 | 163 (0.980) | 20 (0.170) | 11/204 | 5.1 | 16.1% | intergenic (‑87/‑1007) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | 1000281 = | 94 (0.810) | intergenic (‑108/‑398) | BCHEFKBB_01022/BCHEFKBB_01023 | Opacity protein opA54 [NGO_05420]/hypothetical protein [NGO_1040] | |||||
| * | ? | Exported | = 2015238 | 332 (2.000) | 13 (0.100) | 12/230 | 5.5 | 5.2% | coding (248/681 nt) | BCHEFKBB_02064 | large pilS cassette protein [NGO_10975] |
| ? | Exported | 2015627 = | 213 (1.630) | coding (313/363 nt) | BCHEFKBB_02065 | hypothetical protein [NGO_10980] | |||||
| * | ? | Exported | 2015596 = | 276 (1.660) | 13 (0.100) | 11/230 | 5.9 | 6.9% | coding (344/363 nt) | BCHEFKBB_02065 | hypothetical protein [NGO_10980] |
| ? | Exported | = 2017675 | 136 (1.040) | coding (282/483 nt) | BCHEFKBB_02068 | fimbrial protein [NGO_10995] | |||||
| * | ? | Exported | 1231241 = | 124 (0.750) | 56 (0.400) | 11/244 | 6.3 | 35.1% | intergenic (+682/‑102) | BCHEFKBB_01273/BCHEFKBB_01274 | hypothetical protein [NGO_1277]/Opacity protein opA54 [NGO_06725] |
| ? | Exported | = 1482462 | NA (NA) | intergenic (+407/‑68) | BCHEFKBB_01513/BCHEFKBB_01514 | hypothetical protein [NGO_07995]/Opacity protein opA54 [NGO_1513] | |||||
| * | ? | Exported | = 2039437 | 140 (0.840) | 9 (0.070) | 9/222 | 6.5 | 7.6% | intergenic (‑477/+339) | pilE/BCHEFKBB_02088 | Fimbrial protein/pilin [NGO_11115] |
| ? | Exported | 2039830 = | 111 (0.880) | coding (369/423 nt) | BCHEFKBB_02088 | pilin [NGO_11115] | |||||
| * | ? | Exported | = 75312 | NA (NA) | 32 (0.250) | 9/224 | 6.5 | 35.4% | intergenic (‑53/‑1041) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | = 924765 | 76 (0.460) | intergenic (‑516/‑44) | BCHEFKBB_00942/BCHEFKBB_00943 | proline iminopeptidase [NGO_0949]/Opacity protein opA54 [NGO_08230] | |||||