New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Exported	= 75346	NA (NA)	191 (1.060)	34/216	1.9	NA	intergenic (‑87/‑1007)	BCHEFKBB_00065/BCHEFKBB_00066	Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071]
	?	Exported	= 1482447	NA (NA)					intergenic (+392/‑83)	BCHEFKBB_01513/BCHEFKBB_01514	hypothetical protein [NGO_07995]/Opacity protein opA54 [NGO_1513]

TAATCCGCCCTTCAACATCAGTGAAAATCTTTTTTTAACCGGTTAAACCGAATAAGGAGCCGAAAATGAATCCAGCCCGCAAAAAACCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC  >  Exported/1482326‑1482476                                                                                                                          |                              taatcatccataaaaCATCAGTTAAATTATTTTATTAACCGGTTAAACCGAATAAGGAGCCGAAAATGAATCCAGCCATCAAAAAACcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctattc  <  2:1695140/138‑1 (MQ=1)                                                                                                                          |                              TAATCCGCCCTTCAACATCAGTGAAAATCTTTTTTTAACCGGTTAAACCGAATAAGGAGCCGAAAATGAATCCAGCCCGCAAAAAACCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC  >  Exported/1482326‑1482476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.