| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,831,990 | 0 | G | A | 31.1% | 486.4 / inf | 334 | intergenic (‑123/+230) | BCHEFKBB_01881/BCHEFKBB_01882 | Opacity protein opA54 [NGO_09965]/transposase [NGO_09970] |
| Reads supporting (aligned to +/- strand): ref base G (154/74); new base A (62/41); total (219/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 359 total aligned reads displayed.
AGGCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAT > Exported/1831843‑1832140 | aGGCGTAAGCCAGATCCGCCTGCACCTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGACGAGAAGAGAAGTGTTTTGTCGACCg > 2:1686620/1‑151 (MQ=11) ggCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAAGAGAAGTTGTTTGTCGGCCGt > 2:664122/1‑151 (MQ=255) ggCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGt > 1:441364/1‑151 (MQ=255) gCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GACGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTa > 1:90858/1‑151 (MQ=255) gCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTa > 1:259051/1‑151 (MQ=255) gCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTa > 1:554550/1‑151 (MQ=255) tAAGGCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGTGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGc < 2:465403/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCT‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 2:1733096/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGCGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 1:394341/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGc < 1:1831444/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 1:927209/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 1:485889/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTCTCGACCGTATGc < 1:1179271/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGATTTTTGTCGACCGTATGc < 1:409375/151‑1 (MQ=255) tAAGCCAGATCCGCCTGCACAGACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGc < 2:1425828/151‑1 (MQ=255) aaGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCa < 2:1822971/151‑1 (MQ=255) aGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCat > 1:1332495/1‑151 (MQ=255) aGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCat > 1:1273688/1‑151 (MQ=255) aGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCat > 2:1773264/1‑151 (MQ=255) aGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTGTTTTGTCGACCGTATGCat > 2:260439/1‑151 (MQ=255) aGCCAGATCCGCCTGCACAGACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGACGAGAAGAGAAGAGAAGAGAAGAGACGAGAAGAGAAGAGAAGAGAAGTGTTTTGTCGACCGGATGCat > 2:1711994/1‑151 (MQ=14) caccGCCTGCACATCCGGGCCCCGCCCATGGTCTTCACCCGCCGCCCCCCCTGCC‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGACAAGAGAAGAGAAGAGAAGTACTTTGTCGACCGTATGCATATCAAc < 2:1498422/149‑1 (MQ=14) ccGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGGTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGCAGAGAAGAGAAGAGAAGTTGTTGGTCGACCGTATGCATATCAACTc < 1:355359/151‑1 (MQ=14) ccGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATc < 2:1354586/151‑1 (MQ=11) cGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GACGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGGAAGTTTTTTGTCGACCGTATGCATATCAACTc > 2:1699845/1‑150 (MQ=255) cGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTGTGCATATCAACTc > 1:1075221/1‑150 (MQ=255) gCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGTGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAata > 1:1018819/1‑151 (MQ=255) gCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGTAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAata > 2:425053/1‑151 (MQ=255) gCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAata > 2:618518/1‑151 (MQ=255) cacaTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAatat > 1:1244865/1‑151 (MQ=255) cacaTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAatat > 1:1129517/1‑151 (MQ=255) cacaTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATTCATATCAACTCCGAatat > 2:323351/1‑151 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCGGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGaa > 1:1389865/1‑151 (MQ=14) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGACGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGACGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAatattt > 2:855250/1‑149 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTTTCGAACGTATTCATATCAACTCAGAatattt > 1:652305/1‑149 (MQ=14) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGaaaat > 1:542843/1‑146 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCCAatattt > 2:1670609/1‑149 (MQ=255) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTGTTTGTCGGCCGGAGGCATATCAACTCCGCatag > 2:1644012/1‑148 (MQ=17) caTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGATTTTTGTCGACAGTATGCATATAAACACCGAatatat > 1:869665/1‑149 (MQ=14) aTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAatattta < 1:1466530/151‑4 (MQ=255) aTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAatattta > 2:13114/1‑148 (MQ=255) aTACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAatattta > 2:12959/1‑148 (MQ=255) ggCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAATAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGAtt > 1:1593432/1‑151 (MQ=255) ggCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGAt < 2:1012727/150‑1 (MQ=255) gCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATc > 2:911231/1‑130 (MQ=255) cgcCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTTTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAatt > 1:1595661/1‑151 (MQ=255) cgcCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAatt > 1:732363/1‑151 (MQ=255) cgcCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAatt > 2:646667/1‑151 (MQ=255) cgcCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATAGCTAAGATTAAatt > 2:830756/1‑151 (MQ=255) cgcCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAatt > 1:1849449/1‑151 (MQ=255) cccATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAattat > 1:1090478/1‑151 (MQ=255) cccATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAattat > 2:1436902/1‑151 (MQ=255) tGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaa > 1:1218193/1‑151 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGACGAGAAGAGAAGAGAAGAGAAGAGAAGTGAAGAGAAGTGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATAAAATTATTaaaaa > 1:1000438/1‑151 (MQ=17) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGACGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 1:1160962/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCCACTCCGAATATCTAAGAGTAAATTATTaaaaa > 2:1800827/1‑151 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTaaaaa > 1:1648468/1‑151 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTaaaaa > 2:225892/1‑151 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 2:548768/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 2:1400846/1‑150 (MQ=255) gTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTGTTTTGTCGACCGTATGCATATCAACTCCGAATATTTAAGATTAAATTATTaaaag > 2:852041/1‑150 (MQ=255) ccgcccgcGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGCAGAGAAGAGAAGAGAAGAGAAGAGCACAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTtaat < 1:664333/150‑1 (MQ=255) ccgcccgcGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTtaat < 2:1581444/150‑1 (MQ=255) gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaaGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAATATTTTTAATAAAAGCCAAGTATTTTAt > 1:1497094/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCa > 1:192831/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGACAAGTATTTTATCa > 2:27123/1‑151 (MQ=255) aagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATc < 1:1793940/149‑1 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGAttt > 1:750811/1‑151 (MQ=255) aagagaagagaagagaacagaaccgaagacacgagaagagaacagaagcgaacagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTg < 1:863424/151‑1 (MQ=14) gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTga > 2:1189579/1‑149 (MQ=255) agagaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTc > 1:1050610/1‑76 (MQ=35) gaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTtaata > 2:411047/1‑112 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATAAGATTTGTTTTGCCGGGatat > 2:981283/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAAAGCCAAGTATTTTATCAGATTTTTTTTGCCGGGatat > 2:573569/1‑151 (MQ=255) agaagagacgagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGa < 1:1865668/149‑1 (MQ=255) agaagagaagagacgagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAt < 2:1851671/150‑1 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAATATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAttt > 2:1068535/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTTTTTTGCCGGGATATGAttt > 1:471955/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAttt > 2:1479434/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAttt > 1:587048/1‑151 (MQ=255) gaagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAtttgtttt > 1:1415836/1‑151 (MQ=255) aagagaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAtttgttt < 1:1039758/149‑1 (MQ=255) aagagaagacaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGAtttgttt < 2:1273245/149‑1 (MQ=255) gaagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTaa > 2:749729/1‑151 (MQ=255) aagagacgagaagagaagagacgagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTa < 2:1533238/149‑1 (MQ=255) aagagaagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTaa < 2:1163822/150‑1 (MQ=255) aagagaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGaa < 1:965149/149‑1 (MQ=255) gaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGtatt > 2:707356/1‑151 (MQ=255) gaagagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATAATATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAATAATGtatt > 2:1828553/1‑151 (MQ=255) gagaagagaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTAGTTAAAGAATGtatttat > 2:206223/1‑151 (MQ=255) agaagagacgagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGtatttat < 2:215450/150‑1 (MQ=255) gaagagaagagaagTTTTTTGTCGGCCGGATGCATATCAACTACGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATAAGATTTGTTTTGCCGGTATATGATTTGTTTTGTTAAAGAATGTatttattt > 2:375325/1‑151 (MQ=14) gaagagaagagaagTTTTTTGTCGCCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATc > 1:1703030/1‑100 (MQ=255) gaagagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAATATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGTGTTGTTTTGTTAAAGAATGTATTTATTTTTTaa > 1:153044/1‑151 (MQ=255) gagaagTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAAAAAACGACAACTATTTTATCAGATTTTTTTTGCGGGGATATGATTTTTTTTGTTAAAGAATGTATTTAATTTTTAAAAt > 2:1137526/1‑151 (MQ=14) gTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCgg > 1:767398/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 1:325779/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 1:1392004/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 1:734749/1‑151 (MQ=255) gCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAt > 2:925116/1‑151 (MQ=255) | AGGCGTAAGCCAGATCCGCCTGCACATACGGGCCGCGCCCATGGTCTTCACCCGCCGCCCGCGCTGCG‑‑‑‑‑GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGTTTTTTGTCGGCCGTATGCATATCAACTCCGAATATCTAAGATTAAATTATTAAAAAGATTGTTAATAAACGCCAAGTATTTTATCAGATTTGTTTTGCCGGGATATGATTTGTTTTGTTAAAGAATGTATTTATTTTTTAAAATCCCGGCCAGCCGGGAT > Exported/1831843‑1832140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |