mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.37.1 revision d7ab7d0ba1c1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 42,301 | 5 bp→5 bp | coding (156‑160/462 nt) | BCHEFKBB_00042 ← | acetyl‑CoA carboxylase [NGO_0045] |
| RA | 60,035 | G→T | G93C (GGC→TGC) | BCHEFKBB_00055 → | MFS transporter [NGO_0059] |
| JC | 358,371 | (CGCAA)16→14 | coding (128‑137/243 nt) | BCHEFKBB_00366 → | hypothetical protein [NGO_0366] |
| RA | 522,455 | A→G | Q845R (CAG→CGG) T130T (ACT→ACC) |
BCHEFKBB_00548 → BCHEFKBB_00549 ← |
restriction endonuclease EcoPI subunit R[NGO_0546] hypothetical protein |
| RA | 522,457 | 4 bp→CC | coding (2536‑2539/2592 nt) coding (385‑388/462 nt) |
BCHEFKBB_00548 → BCHEFKBB_00549 ← |
restriction endonuclease EcoPI subunit R[NGO_0546] hypothetical protein |
| RA | 522,467 | 2 bp→CGG | coding (2546‑2547/2592 nt) coding (377‑378/462 nt) |
BCHEFKBB_00548 → BCHEFKBB_00549 ← |
restriction endonuclease EcoPI subunit R[NGO_0546] hypothetical protein |
| RA | 1,162,857 | C→T | G411D (GGC→GAC) | BCHEFKBB_01205 ← | long‑chain fatty acid‑‑CoA ligase [NGO_1213] |
| RA | 1,788,228 | (C)10→11 | intergenic (+767/‑103) | BCHEFKBB_01823 → / → BCHEFKBB_01824 | hypothetical protein [NGO_1810]/pseudouridine synthase [NGO_1811] |
| RA | 2,073,047 | (G)9→12 | intergenic (‑108/‑396) | BCHEFKBB_02124 ← / → BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| RA | 2,134,653 | (G)9→13 | coding (166/183 nt) | BCHEFKBB_02183 → | hypothetical protein |
| RA | 2,135,730 | (G)10→13 | intergenic (+323/‑69) | BCHEFKBB_02184 → / → BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | Exported | 745765–745878 | 747139–745880 | 3–1375 | 144 [143] | [143] 152 | BCHEFKBB_00758–[BCHEFKBB_00760] | BCHEFKBB_00758,BCHEFKBB_00759,[BCHEFKBB_00760] |
| * | * | ÷ | Exported | 1072593–1075092 | 1077570–1075129 | 38–4978 | 145 [138] | [113] 145 | [BCHEFKBB_01101]–BCHEFKBB_01111 | [BCHEFKBB_01101],BCHEFKBB_01102,BCHEFKBB_01103,BCHEFKBB_01104,BCHEFKBB_01105,BCHEFKBB_01106,BCHEFKBB_01107,BCHEFKBB_01108,BCHEFKBB_01109,BCHEFKBB_01110,BCHEFKBB_01111 |
| * | * | ÷ | Exported | 1160013–1160223 | 1160538–1160229 | 7–526 | 153 [71] | [140] 144 | [BCHEFKBB_01202]–BCHEFKBB_01203 | [BCHEFKBB_01202],BCHEFKBB_01203 |
| * | * | ÷ | Exported | 1215576–1223340 | 1223599 | 260–8024 | 145 [131] | [140] 145 | BCHEFKBB_01257–BCHEFKBB_01268 | BCHEFKBB_01257,BCHEFKBB_01258,BCHEFKBB_01259,BCHEFKBB_01260,BCHEFKBB_01261,BCHEFKBB_01262,BCHEFKBB_01263,BCHEFKBB_01264,BCHEFKBB_01265,BCHEFKBB_01266,BCHEFKBB_01267,BCHEFKBB_01268 |
| * | * | ÷ | Exported | 2065335–2065503 | 2065952–2065619 | 117–618 | 144 [142] | [143] 150 | [BCHEFKBB_02118] | [BCHEFKBB_02118] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 75302 | NA (NA) | 240 (1.010) +GAAGA |
46/196 | 0.3 | NA | intergenic (‑43/‑1051) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | 75303 = | NA (NA) | intergenic (‑44/‑1050) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] | |||||
| * | ? | Exported | = 75346 | NA (NA) | 191 (1.060) | 34/216 | 1.9 | NA | intergenic (‑87/‑1007) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| ? | Exported | = 1482447 | NA (NA) | intergenic (+392/‑83) | BCHEFKBB_01513/BCHEFKBB_01514 | hypothetical protein [NGO_07995]/Opacity protein opA54 [NGO_1513] | |||||
| * | ? | Exported | 1886992 = | 197 (0.800) | 89 (0.510) +43 bp |
32/208 | 2.0 | 37.1% | intergenic (+141/+341) | BCHEFKBB_01930/BCHEFKBB_01931 | membrane protein [NGO_1910]/GIY‑YIG nuclease [NGO_1911] |
| ? | Exported | = 1888024 | 230 (0.930) | intergenic (‑407/+174) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] | |||||