mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.37.1 revision d7ab7d0ba1c1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 55 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,135,730 | 4 | . | G | 79.4% | 113.8 / 53.9 | 68 | intergenic (+323/‑69) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| * | Exported | 2,134,653 | 5 | . | G | 74.4% | 78.9 / 38.2 | 39 | coding (166/183 nt) | BCHEFKBB_02183 | hypothetical protein |
| * | Exported | 1,729,718 | 1 | . | G | 68.3% | 191.7 / 105.1 | 82 | coding (745/753 nt) | BCHEFKBB_01772 | glycosyl transferase family 1 [NGO_1765] |
| * | Exported | 2,073,047 | 4 | . | G | 48.6% | 52.9 / 87.3 | 35 | intergenic (‑108/‑396) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| * | Exported | 1,887,943 | 0 | A | G | 34.0% | 500.9 / inf | 337 | intergenic (‑326/+255) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 1,887,934 | 0 | T | C | 33.9% | 502.3 / inf | 333 | intergenic (‑317/+264) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 75,335 | 1 | . | G | 33.3% | 21.6 / 17.1 | 12 | intergenic (‑76/‑1018) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| * | Exported | 75,335 | 2 | . | A | 33.3% | 19.8 / 15.6 | 12 | intergenic (‑76/‑1018) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| * | Exported | 75,335 | 3 | . | G | 33.3% | 21.6 / 14.9 | 12 | intergenic (‑76/‑1018) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| * | Exported | 75,335 | 4 | . | A | 33.3% | 19.9 / 12.2 | 12 | intergenic (‑76/‑1018) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| * | Exported | 75,335 | 5 | . | C | 33.3% | 22.4 / 14.4 | 12 | intergenic (‑76/‑1018) | BCHEFKBB_00065/BCHEFKBB_00066 | Opacity protein opA54 [NGO_11100]/peptidase A8 [NGO_0071] |
| * | Exported | 1,887,941 | 0 | C | A | 32.7% | 515.3 / inf | 337 | intergenic (‑324/+257) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] |
| * | Exported | 1,831,990 | 0 | G | A | 31.1% | 486.4 / inf | 334 | intergenic (‑123/+230) | BCHEFKBB_01881/BCHEFKBB_01882 | Opacity protein opA54 [NGO_09965]/transposase [NGO_09970] |
| * | Exported | 1,671,384 | 0 | C | A | 29.5% | 272.7 / 27.8 | 129 | Q18K (CAA→AAA) | BCHEFKBB_01719 | ribonuclease II [NGO_1713] |
| * | Exported | 55,573 | 0 | T | A | 29.3% | 84.9 / 11.3 | 63 | H30Q (CAT→CAA) | BCHEFKBB_00050 | hypothetical protein |
| * | Exported | 1,572,212 | 0 | C | A | 28.5% | 331.1 / 48.9 | 194 | M223I (ATG→ATT) | BCHEFKBB_01601 | hypothetical protein [NGO_1599] |
| * | Exported | 1,202,405 | 0 | G | T | 27.0% | 403.1 / 32.1 | 215 | L97F (TTG→TTT) | BCHEFKBB_01249 | membrane protein [NGO_1252] |
| * | Exported | 1,202,416 | 0 | C | A | 25.8% | 398.8 / 10.3 | 210 | S101Y (TCC→TAC) | BCHEFKBB_01249 | membrane protein [NGO_1252] |
| * | Exported | 801,460 | 0 | C | A | 24.7% | 366.7 / 36.2 | 190 | R178R (CGC→CGA) | cysI | Sulfite reductase [NADPH] hemoproteinbeta‑component |
| * | Exported | 107,056 | 0 | A | T | 24.7% | 355.3 / 50.6 | 186 | L44Q (CTG→CAG) | BCHEFKBB_00094 | pilus assembly protein PilP [NGO_0097] |
| Marginal new junction evidence (lowest skew 10 of 87 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2135720 | 6 (0.030) | 104 (0.430) +GGGG |
28/266 | 4.7 | 94.5% | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] |
| ? | Exported | 2135721 = | 6 (0.020) | intergenic (+314/‑78) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | 2132863 = | 176 (0.710) | 79 (0.390) +TCCCCCCCCCCCCCC |
23/244 | 5.3 | 47.7% | intergenic (+329/‑67) | BCHEFKBB_02180/BCHEFKBB_02181 | glycyl‑tRNA synthetase subunit beta [NGO_2154]/glycosyl transferase [NGO_11610] |
| ? | Exported | = 2135720 | 31 (0.140) | intergenic (+313/‑79) | BCHEFKBB_02184/BCHEFKBB_02185 | glycosyltransferase [NGO_11620]/glycosyl transferase family A [NGO_2158] | |||||
| * | ? | Exported | = 51928 | 166 (0.670) | 56 (0.250) | 24/270 | 6.0 | 21.3% | intergenic (‑429/+96) | BCHEFKBB_00048/BCHEFKBB_00049 | carbamoyl‑phosphate synthase [NGO_0053]/pilus assembly protein [NGO_0055] |
| ? | Exported | 1887832 = | 262 (1.160) | intergenic (‑215/+366) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] | |||||
| * | ? | Exported | = 2134644 | 6 (0.030) | 69 (0.290) +GGGGG |
23/266 | 6.1 | 92.0% | coding (157/183 nt) | BCHEFKBB_02183 | hypothetical protein |
| ? | Exported | 2134645 = | 6 (0.020) | coding (158/183 nt) | BCHEFKBB_02183 | hypothetical protein | |||||
| * | ? | Exported | = 1887130 | 220 (0.890) | 41 (0.230) | 16/210 | 6.2 | 19.2% | intergenic (+279/+203) | BCHEFKBB_01930/BCHEFKBB_01931 | membrane protein [NGO_1910]/GIY‑YIG nuclease [NGO_1911] |
| ? | Exported | 1887862 = | 188 (1.070) | intergenic (‑245/+336) | BCHEFKBB_01931/BCHEFKBB_01932 | GIY‑YIG nuclease [NGO_1911]/pilus assembly protein [NGO_10270] | |||||
| * | ? | Exported | = 260182 | 263 (1.070) | 40 (0.230) +42 bp |
16/210 | 6.2 | 19.2% | intergenic (+282/+193) | BCHEFKBB_00257/BCHEFKBB_00258 | ligand‑gated channel [NGO_1495]/N‑(5'‑phosphoribosyl)anthranilate isomerase[NGO_0261] |
| ? | Exported | = 1887026 | 209 (0.850) | intergenic (+175/+307) | BCHEFKBB_01930/BCHEFKBB_01931 | membrane protein [NGO_1910]/GIY‑YIG nuclease [NGO_1911] | |||||
| * | ? | Exported | 1034985 = | 208 (0.840) | 29 (0.330) +40 bp |
4/106 | 6.4 | 31.4% | intergenic (+401/‑57) | BCHEFKBB_01058/BCHEFKBB_01059 | hypothetical protein/Opacity protein opA54 [NGO_05620] |
| ? | Exported | = 1231240 | 93 (0.600) | intergenic (+681/‑103) | BCHEFKBB_01273/BCHEFKBB_01274 | hypothetical protein [NGO_1277]/Opacity protein opA54 [NGO_06725] | |||||
| * | ? | Exported | = 925782 | 245 (0.990) | 53 (0.330) | 11/190 | 7.4 | 28.4% | intergenic (+275/‑78) | BCHEFKBB_00943/BCHEFKBB_00944 | Opacity protein opA54 [NGO_08230]/TonB‑dependent receptor [NGO_0952] |
| ? | Exported | 1036177 = | 109 (0.690) | intergenic (+446/‑345) | BCHEFKBB_01059/BCHEFKBB_01060 | Opacity protein opA54 [NGO_05620]/acyl‑CoA thioester hydrolase [NGO_1078] | |||||
| * | ? | Exported | = 2073038 | 22 (0.100) | 48 (0.200) +GGGG |
19/268 | 7.6 | 68.5% | intergenic (‑99/‑405) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] |
| ? | Exported | 2073039 = | 22 (0.090) | intergenic (‑100/‑404) | BCHEFKBB_02124/BCHEFKBB_02125 | FetA [NGO_2093]/molecular chaperone GroES [NGO_2094] | |||||
| * | ? | Exported | = 1231240 | NA (NA) | 77 (0.390) +30 bp |
4/126 | 7.8 | NA | intergenic (+681/‑103) | BCHEFKBB_01273/BCHEFKBB_01274 | hypothetical protein [NGO_1277]/Opacity protein opA54 [NGO_06725] |
| ? | Exported | 1532311 = | NA (NA) | intergenic (+293/‑67) | BCHEFKBB_01558/BCHEFKBB_01559 | proline dehydrogenase [NGO_08225]/Opacity protein opA54 [NGO_08230] | |||||